PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_B09854286.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 180aa    MW: 19641.8 Da    PI: 9.4853
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_B09854286.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.4e-3051110159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dgy+WrKYGqK+ k++++pr+Y+rC++a +C+vkkkv+rsaed +v++ tYegeHnh 
  Traes_7DL_B09854286.1  51 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApSCQVKKKVQRSAEDRTVLVATYEGEHNHA 110
                            58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.85546112IPR003657WRKY domain
SuperFamilySSF1182906.41E-2650112IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-2950112IPR003657WRKY domain
SMARTSM007745.8E-3451111IPR003657WRKY domain
PfamPF031068.0E-2552109IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
AVSVNVGPDQ AECTSVHEPC NSKRVRADEC KASRVSKLYV HADPSDLSLV VKDGYQWRKY  60
GQKVTKDNPC PRAYFRCSFA PSCQVKKKVQ RSAEDRTVLV ATYEGEHNHA QPPKMQGSGG  120
RKSAXQQQPK QQSMTEAGSA ADRKNLAEQM AATLTRDPGF KAALVSALSG RILELSPSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-2336113175WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0473741e-158JX047374.1 Triticum aestivum WRKY79 transcription factor (WRKY79) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641578.12e-77PREDICTED: probable WRKY transcription factor 60
SwissprotQ9C5T43e-50WRK18_ARATH; WRKY transcription factor 18
TrEMBLW5I2G61e-131W5I2G6_WHEAT; Uncharacterized protein
STRINGMLOC_70190.11e-108(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.15e-51WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]